Open Access

Incorporation of Mg2+ in surface Ca2+ sites of aragonite: an ab initio study

Progress in Earth and Planetary Science20152:7

DOI: 10.1186/s40645-015-0039-4

Received: 20 October 2014

Accepted: 17 March 2015

Published: 2 April 2015


First-principles calculations of Mg2+-containing aragonite surfaces are important because Mg2+ can affect the growth of calcium carbonate polymorphs. New calculations that incorporate Mg2+ substitution for Ca2+ in the aragonite {001} and {110} surfaces clarify the stability of Mg2+ near the aragonite surface and the structure of the Mg2+-containing aragonite surface. The results suggest that the Mg2+ substitution energy for Ca2+ at surface sites is lower than that in the bulk structure and that Mg2+ can be easily incorporated into the surface sites; however, when Mg2+ is substituted for Ca2+ in sites deeper than the second Ca2+ layer, the substitution energy approaches the value of the bulk structure. Furthermore, Mg2+ at the aragonite surface has a significant effect on the surface structure. In particular, CO3 groups rotate to achieve six-coordinate geometry when Mg2+ is substituted for Ca2+ in the top layer of the {001} surface or even in the deeper layers of the {110} surface. The rotation may relax the atomic structure around Mg2+ and reduces the substitution energy. The structural rearrangements observed in this study of the aragonite surface induced by Mg2+ likely change the stability of aragonite and affect the polymorph selection of CaCO3.


Aragonite Impurity Surface structure First-principles calculation


The formation of calcium carbonate (CaCO3) polymorphs, calcite, aragonite, and vaterite has been extensively investigated due to their importance in geological and biological environments. To account for the formation of a particular polymorph, the role of impurities has been proposed as the controlling factors in many studies (e.g., Kitano 1962; Davis et al. 2000); however, the mechanism for the incorporation of impurities during crystal growth is poorly understood. In this study, we focus on the incorporation of Mg2+ in the aragonite surface and analyze its behavior using first-principles calculations.

Many researchers have previously reported that alkaline-earth cations other than Ca2+ affect the growth kinetics of CaCO3 (e.g., De Yoreo and Vekilov 2003; Astilleros et al. 2010; Nielsen et al. 2013). In particular, Mg2+ has been considered important to the formation of CaCO3 polymorphs. For example, Kitano (1962) indicated that the addition of Mg2+ to a solution promoted the metastable formation of aragonite. Recently, detailed atomic force microscopy (AFM) observations of the growth surface of calcite suggested that Mg2+ inhibits the crystal growth of calcite by blocking the propagation of kink sites (Nielsen et al. 2013) or by increasing the mineral solubility (Davis et al. 2000). To analyze this phenomenon on calcite surfaces at the atomic level, atomistic simulations were also conducted using static lattice energy minimization (Titiloye et al. 1998), molecular dynamics (MD) (de Leeuw and Parker 2001), and electronic structure calculations based on density functional theory (DFT) (Sakuma et al. 2014).

However, there are relatively few studies focusing on the aragonite surface. To discuss the mechanism for the formation of CaCO3 polymorphs, not only should the atomic behavior on the calcite surface be understood but also that on the aragonite surface. Moreover, the Mg content in coral fossils comprising aragonite has been used to reconstruct the past climatic record (e.g., Mitsuguchi et al. 1996); however, the location of Mg2+ in the coral skeleton is strongly debated (Finch and Allison 2008). Therefore, understanding the mechanism for the incorporation of Mg2+ into the aragonite surface is important not only for the mineral and material sciences but also for the biological and environmental sciences.

Divalent cations smaller than Ca2+, such as Mg2+, do not generally enter the aragonite structure, whereas larger cations, such as Ba2+, cannot be incorporated in the calcite structure. However, the structure near a crystal surface differs from the bulk crystal because of its flexibility. Thus, a crystal surface can incorporate ions that are unstable in the bulk structure and play an important role during the formation and subsequent crystal growth of calcium carbonate polymorphs. We investigated the substitution of Mg2+ ions at the Ca2+ sites of aragonite surfaces. Mg2+ is unstable in ninefold coordination in aragonite and does not readily enter into the bulk aragonite structure; however, Mg2+ is expected to be substitutable for Ca2+ at sites near the surface. Recently, Ruiz-Hernandez et al. (2012) performed MD calculations regarding Mg2+ substitution at the aragonite surface. However, they analyzed only the Mg2+ substitution into Ca2+ sites at the top surface. To discuss the incorporation of an ion into a specific surface, the ion substitution energy for Ca2+ sites should be estimated at the top surface and deeper. Furthermore, the substitution of Mg2+ for Ca2+ may change the surface structure. This could affect the stability relations among polymorphs, as surface energy differences among polymorphs have been proposed to account for their stability field (Navrotsky 2004; Kawano et al. 2009). Hence, an in-depth analysis of these surface structures and their incorporation of ions is important; however, details regarding the surface structural changes when a Mg2+ ion is incorporated at the surface are presently lacking. Therefore, in this study, the stability of Mg2+ near the aragonite surface and the structure of Mg2+-containing aragonite surface were investigated using first-principles calculations, and the effect of Mg2+ on the formation of polymorphs was examined.


The optimized geometries and total energies of the surfaces were obtained using DFT with the Vienna ab initio simulation package (VASP) code (Kresse and Hafner 1993, 1994; Kresse and Furthmüller 1996a, b; Kresse and Joubert 1999) and the Perdew-Burke-Ernzerhof version of the generalized gradient approximation (GGA-PBE) (Perdew et al. 1996). The energy cutoff of the plane-wave basis set was 900 eV, which was tested for energy convergence. The valence states for Ca, Mg, C, and O are 3s23p64s2, 2p63s2, 2s22p2, and 2s22p4, respectively, following previous DFT calculations for CaCO3 (Hossain et al. 2009) and MgCO3 (Hossain et al. 2010).

Prior to calculation of the aragonite surface, the structural parameters of aragonite were simulated. The calculated lattice parameters are a = 5.022 Å, b = 8.042 Å, and c = 5.816 Å, whereas the experimental values are a = 4.962 Å, b = 7.969 Å, and c = 5.743 Å (Balmain et al. 1999). The calculated C-O bond lengths are 1.291 to 1.301 Å, which are comparable to previous experimentally and theoretically obtained values (Balmain et al. 1999; Akiyama et al. 2011).

Aragonite surfaces were simulated as repeated slabs. The unit supercell contained 80 atoms and 4 or 5 Ca and CO3 layers of the unit (2 × 1) surface structure with a 15 Å thick vacuum layer. The macroscopic dipole was removed, and the neutrality of the supercell was ensured by the two equivalent surfaces on opposite sides of the slab. To calculate the substitution energy, the total energy of the slab was simulated by relaxing the atoms except those on the bottom layer. In the calculation, the supercell parameters were fixed using the calculated aragonite unit cell parameters, because Mg ions are not supposed to be substituted into the bulk Ca sites but only into surface sites; hence, substitution does not affect the lattice constants. Optimization was performed with a convergence threshold of 5.0 × 10−6 eV/atom for the maximum energy change and 0.05 eV/Å for the maximum force. The atomic structures of the slab were drawn with the VESTA software (Momma and Izumi 2008). CaCO3 crystals generally grow in an aqueous solution with H2O molecules just above the surface; however, the presence of the vacuum layer above the surface was considered here. The validity of this setting will be discussed in the next section.

Results and discussion

Substitution energy of Mg2+ for Ca2+ near the aragonite surface

We calculated the surface energies of the aragonite {001}, {010}, and {110} surfaces, which are generally expressed in experimental morphology. On the {001} surface, the CO3 groups (triangles) are arranged parallel to the surface, whereas these groups are perpendicular to the {010} and {110} surfaces. Recently, Akiyama et al. (2011) determined the stable surface structure of calcite and aragonite via DFT calculations. They reported that the most stable configuration of {001} is a CO3-terminated surface, wherein the coverage of CO3 ions is 0.5. In contrast, the most stable configurations for {010} and {110} are Ca-terminated planes, wherein the coverage of Ca2+ ions is 0.5. The surface energy of these stable configurations were calculated to be 0.49, 0.57, and 0.49 J/m2 for the {001}, {010}, and {110} surfaces, respectively (Table 1). In the calculation, the positions of all the slab atoms were relaxed, and the surface energies E surf were obtained by dividing the difference between the total energy of the slab E slab and that of the bulk crystal E bulk, including the same number of atoms, by the total area of the calculated surface A, which includes the top and bottom surfaces:
Table 1

Estimated surface energies (J/m 2 ) of the aragonite surfaces


This work

Akiyama et al.

de Leeuw and Parker



Empirical potential






\( {\theta}_{{\mathrm{CO}}_3}=0.5 \)






θ Ca = 0.5






θ Ca = 0.5





$$ {E}_{\mathbf{surf}} = \left({E}_{\mathbf{slab}}-{E}_{\mathbf{bulk}}\right)/A. $$
The results suggest that the {001} and {110} surfaces are slightly more stable than the {010} surface, which is consistent with previous DFT and empirical potential calculations (Akiyama et al. 2011; De Leeuw and Parker 1998). Therefore, we focused on the {001} and {110} aragonite surfaces and analyzed the substitution energy of Mg2+ for Ca2+. The structures considered in this study are shown in Figure 1. In the first Ca layer of the {001} surface, there are two types of Ca sites because the coverage of CO3 ions is 0.5 in the most stable structure of this surface. The site labeled A in Figure 1 (denoted as site A hereafter) is the site above which no CO3 groups are located, whereas the site labeled B in the same figure (site B) is similar to the site in the bulk with respect to the arrangement of surrounding CO3 2− ions, except for the lack of one CO3 2−. In contrast, there are two Ca layers in the {110} surface with different depths between the CO3 layers.
Figure 1

Relaxed atomic arrangement of (a) {001} and (b) {110} surfaces. Red, brown, and blue circles represent O, C, and Ca, respectively. Ca layers are numbered from the top to deeper layers - see text regarding [A] and [B] for the top Ca layer on the {001} surface. In addition, there are two types of sites in the second and third layers of the {001} surface, which are labeled [A′], [B′] and [A″], [B″], respectively.

De Leeuw and Parker (1998) estimated the energies of pure and hydrated surfaces and found that hydration does not stabilize the carbonate-terminated {001} surface and less so the calcium-terminated {110} surface (Table 1). In contrast, the calcium-terminated {010} surface was significantly stabilized by hydration. The surface energies calculated in this study show almost the same trend. Therefore, the substitution energies obtained for nonhydrated and hydrated {001} and {110} surfaces can be considered to have similar features. It is thus reasonable to analyze nonhydrated {001} and {110} surfaces to discuss the exchange energy in aqueous solutions, whereas Nada (2014) recently reported the importance of water layers on the calcite {104} surface.

In an aqueous solution, Mg2+ ions are surrounded by H2O molecules and exist as hydration shells (e.g., Marcus 1987; Rodriguez-Cruz et al. 1999; Bock et al. 2006). Therefore, to substitute into a surface Ca2+ site, a Mg atom must be released from the hydration shell. In this study, a six-coordinated complex was assumed for the divalent cations in the hydration shells, and the cohesive energies of the primary hydration shells of Ca2+ and Mg2+ ions were calculated using the DFT method as references. The calculated and experimental Gibbs free energies for hydration (Marcus 1991) have an excellent 1:1 correspondence, as shown in Figure 2. Following the discussion by Sakuma et al. (2014), such correspondence suggests that the relative binding enthalpy of the first hydration shell with six water molecules can describe the relative free energies of divalent cations in water.
Figure 2

Relation between experimental free energy of solvation and binding enthalpy of the first hydration shell. The binding energies of the hydration shell with six water molecules were calculated.

Using these results, the energy ΔE of the Mg2+ substitution in surface Ca2+ sites of aragonite can be expressed as follows:
$$ \boldsymbol{\Delta} E = \left[{E}_{\mathbf{surface}\left(\mathbf{Mg}\right)}+{E}_{\mathbf{hydration}\ \mathbf{shell}\left(\mathbf{C}\mathbf{a}\right)}\right]-\left[{E}_{\mathbf{surface}\left(\mathbf{C}\mathbf{a}\right)}+{E}_{\mathbf{hydration}\ \mathrm{s}\mathbf{hell}\left(\mathbf{Mg}\right)}\right], $$

where E surface(Ca) and E surface(Mg) represent the total energies of the aragonite slab with and without Mg, and E hydration shell(Ca) and E hydration shell(Mg) are the energies of the hydration shells of Ca2+ and Mg2+ with 6H2O, respectively. The calculated cohesive energy of the primary hydration shell of Mg2+ with 6H2O is approximately −13.8 eV (1,330 kJ/mol) and that for Ca2+ is −10.8 eV (1,030 kJ/mol), which indicates that the hydration shell of the smaller cation is more stable than that of the larger cation.

For Mg2+ substitution in Ca2+ sites of the bulk aragonite structure, the substitution energy obtained from Equation 2 using the energy of the bulk instead of the energy of the slab was calculated as 93.1 kJ/mol. However, the substitution energy for the surface site is much smaller than that for the bulk. Whether Mg ions will actually substitute for Ca depends on the chemical potential difference including entropy, while the entropy of an ion in aqueous solutions is difficult to estimate. Therefore, the negative or positive sign of the substitution energy ΔE does not directly mean that Mg ions enter the crystal or not. However, these energies can provide information regarding the relative stability of Mg in the site around the surface. The results of the present calculations suggest that Mg2+ can substitute more easily at surface sites than in the bulk aragonite structure. Figure 3 shows the Mg2+ substitution energy ΔE for a Ca2+ site as a function of depth for the interface of the {001} and {110} surfaces.
Figure 3

Energies for Mg 2+ substitution at Ca 2+ in aragonite surface sites. The substitution energies are shown as a function of the depth from the interface of (a) {001} and (b) {110} surfaces. Red lines are drawn at 93.1 kJ/mol, which is the energy for Mg2+ substitution into bulk aragonite. Layer numbers, [A], [A′], [A″], [B], [B′], and [B″] correspond to the substitution energies for the site shown in Figure 1.

We first discuss the {001} surface (Figure 3a). When Mg2+ substitutes into site A in the first Ca layer, above which no CO3 groups are located, the substitution energy is almost zero and Mg2+ is easily incorporated into site A, which agrees with the MD calculations (Ruiz-Hernandez et al. 2012). The substitution energy increases when Mg2+ is substituted into the B site but is still much lower than that when it enters the Ca site in the bulk aragonite structure. However, for substitution within the deeper layers, the substitution energies increase significantly and reach almost that of the bulk aragonite structure. Thus, Mg2+ readily attaches to the first layer of the {001} surface but less so within the deeper layers.

In the {110} surface, the substitution energy of Mg2+ into the first Ca layer is almost the same as that for the B site in the {001} surface, and it rapidly increases with substitution in the deeper layers (Figure 3b). However, for this surface, even the energy for the substitution at Ca sites in the fifth layer is smaller than that for the bulk. This suggests that for {110} faces, a slightly higher energy would be required for Mg2+ ions to enter the Ca site of the top layer, whereas Mg2+ ions would enter the deeper layers more easily than the {001} face.

Structure of aragonite surfaces with Mg2+ ions at the Ca2+ sites

The structures of aragonite surfaces that contain Mg2+ ions were examined next. In the aragonite {001} surface, the CO3 2− ions are arranged parallel to the surface; therefore, the flexibility of the movement and rotation of ions initially seem higher than those on the other surfaces. Figure 4b shows the relaxed structure of the {001} surface containing Mg2+ ions in B sites of the first Ca layer, where Mg2+ is surrounded by CO3 ions. Figure 4 shows that the CO3 groups move from the original positions and rotate 30° in the same direction. Notably, not only the CO3 2− ions above the Mg2+ ions, which exist on the surface, but also the CO3 groups below Mg2+, which make up the second CO3 layer, rotate in the same manner. The arrangement of CO3 ions around a Mg atom resembles the structure of calcite. To clarify this, the arrangement of the CO3 groups around the Mg ions is shown in Figure 5. This figure shows that CO3 groups around a Mg2+ ion move and rotate to assume six-coordinate geometry, which is the arrangement of the MgO6 octahedron in the calcite structure.
Figure 4

Top view of the relaxed aragonite {001} surface wherein Mg 2+ substitutes for Ca 2+ . Comparison of (a) surface structure without Mg2+ ions and (b) with Mg2+ substituting for Ca2+. Red, brown, blue, and orange circles represent O, C, Ca, and Mg, respectively. [A] and [B] are labeled as in Figure 1.

Figure 5

Details of the arrangement of CO 3 groups around the cation on the top {001} surface. (a) Ca and (b) Mg in the B site on the top layer of the {001} surface. Mg presumably prefers six-coordinate (octahedral) geometry as in the calcite structure.

Furthermore, the {110} surface seems to have less flexibility than the {001} surface because the CO3 groups are arranged perpendicular to the {110} surface. However, even in this case, the CO3 groups move and rotate to achieve six-coordinate geometry, as shown in Figure 6. Moreover, for the {110} surface, when Mg2+ substitutes at a Ca site, not only in the first but also in the fifth Ca layer, the CO3 groups also rotate to achieve six-coordinate geometry but do not form MgO6 octahedra (Figure 7). This is opposite to the {001} surface, wherein the CO3 groups do not move to accommodate the Mg substitution into the Ca sites near the {001} surface, except in the top layer. This is probably because atoms can move easily perpendicular to the surface, but less easily when parallel to it because the size of the surface is fixed, even though the layer thickness is not fixed. Therefore, contrary to the first expectation, it is easier for CO3 groups to rotate in the {110} surface where atoms easily move parallel to the CO3 groups. In contrast, in the {001} surface, atoms do not readily move in the long direction parallel to the CO3 groups, because the size of this plane is fixed.
Figure 6

Side views of the relaxed aragonite {110} surface in which Mg 2+ substitutes for Ca 2+ . (a) No substitution, (b) substitution into the second Ca layer, and (c) substitution into the fourth Ca layer. Red, brown, blue, and orange circles represent O, C, Ca, and Mg, respectively.

Figure 7

Detailed arrangement of CO 3 groups around Mg on the {110} surface. The arrangement of CO3 groups around Mg at the Ca site of the fourth layer in the {110} surface is shown, which suggests that Mg achieves six-coordinate geometry but does not form MgO6 octahedra as in the calcite structure.

The differences between the {001} and {110} surfaces lead to differences in the substitution energies; when Mg2+ ions substitute in the deeper Ca layers, the atomic arrangement near the {110} surface is more relaxed than that near the {001} surface. Hence, the substitution energies for {110} are lower than those for the {001} surface. The energy gained by the rotation of CO3 is estimated to be around 20 eV, by comparison of the substitution energy for the deep layers of the {110} surface and the value for the substitution in the bulk where CO3 groups are not rotated.

The results suggest that the CO3 groups near the surface easily move and rotate relative to their original positions. Moreover, Mg2+ ions strongly prefer six-coordinate geometry. Therefore, the presence of Mg2+ affects the surface stability of aragonite, and it may further affect the structure of the small clusters that appear during the early formation of CaCO3, which has more flexibility than the surface, both of which affect the polymorph selection of CaCO3.


First-principles calculations were performed for Mg2+-containing aragonite surfaces. The results suggest that the substitution energy of Mg2+ for Ca2+ at the surface is lower than the substitution energy of Mg2+ for Ca2+ in the bulk structure. However, for the {001} surface, when Mg2+ substitutes for Ca2+ deeper than the second Ca layer, the substitution energy is almost the same as that for substitution in the bulk aragonite structure. In contrast, for the {110} surface, even when Mg2+ ion substitutes into deeper layers, the substitution energy is still lower than the substitution energy in the bulk aragonite structure. Thus, Mg2+ ions easily attach onto the {001} surface with lower energy; however, it should be difficult for these ions to move to deeper layers. In contrast, for the {110} surface, a relatively higher energy is required for Mg2+ ions to substitute for Ca2+ at the top surface sites, whereas they enter more easily to deeper layers than the {001} face. This is probably because the atomic structure of this surface is more relaxed, and the CO3 groups move and rotate from their original positions even when Mg2+ ions are in deeper layers. In contrast, for the {001} surface, the CO3 groups do not move when Mg2+ substitutes for Ca2+, except in the top layer sites where CO3 groups easily move and rotate to achieve six-coordinate geometry, such as CaO6 octahedra in the calcite structure. Mg2+ generally assumes a preferential six-coordinate geometry, even at the aragonite surface, indicating that it changes the surface stability of aragonite, which may affect the formation of CaCO3 polymorphs.



atomic force microscopy


density functional theory


generalized gradient approximation-Perdew-Burke-Ernzerhof


molecular dynamics


Vienna ab initio simulation package



The authors would like to thank Y. Kimura, one of the session conveners of the 2013 JpGU annual meeting, for his recommendation for submission of the present study to PEPS. Thanks are also due to two anonymous reviewers and the editor for their constructive comments. This study was supported by a MEXT grant for the tenure-tracking system and JSPS KAKENHI Grant Number 26870010.

Authors’ Affiliations

Creative Research Institution (CRIS), Hokkaido University
Faculty of Science, Hokkaido University
Environment and Energy Materials Division, National Institute for Materials Science


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